Difference between revisions of "Getz Lab Wiki Main Page"

From user's Wiki!
Jump to navigation Jump to search
 
(131 intermediate revisions by 17 users not shown)
Line 1: Line 1:
== TBD - will reorganize later ==
+
__TOC__
  
[[Google Cloud Billing]]
+
<!--
 +
<blockquote>Mission: ''to organize the <S>world's</s> lab's information and make it universally accessible and useful.''</blockquote>
 +
-->
 +
== General ==
  
[[Aaron's Python guide]]
+
[https://wiki.getzlab.org/wiki/Special:CreateAccount Create your wiki account]
 +
 
 +
[[Who Knows What]]
 +
 
 +
[[How to contribute to this wiki]]
 +
 
 +
== Onboarding ==
 +
 
 +
[[New User Guide]]
 +
 
 +
== Computing ==
 +
 
 +
[[Computing in the Getz Lab: Getting Started]]
 +
 
 +
[[Core bioinformatics tools]]
 +
 
 +
[[Other computational tools]]
 +
 
 +
[[Bioinformatics pipelines]]
 +
* [[wolF]] (workflow manager)
 +
* [[Computing_in_the_Getz_Lab:_Getting_Started#Terra | Terra]] (workflow manager)
 +
 
 +
[[Google Cloud Platform]]
 +
* [[Google Cloud Billing]]
 +
* [[Google Cloud troubleshooting]]
 +
 
 +
[[GitHub]]
 +
 
 +
[[Reference Files]]
 +
 
 +
[[Data and portals]]
 +
 
 +
[[Common File Types in Bioinformatics]]
 +
 
 +
[[Installing commercial software]]
 +
 
 +
== Project Management ==
 +
 
 +
[[Project Management Resources]]
 +
 
 +
[[Project budgeting]]
 +
 
 +
[https://drive.google.com/drive/folders/1ghCluSTnkyjL3tszjgrNP1KYBfu8hri6 Talk: Running a Standard CGA Project]
 +
 
 +
[[Submitting data to dbGaP]]
 +
 
 +
[[Templates]]
 +
 
 +
[https://getzlab-effort-tracking.uc.r.appspot.com/ Reports]
 +
 
 +
== Educational ==
  
 
[[Educational Materials]]
 
[[Educational Materials]]
  
[[RNA-seq pipeline]]
+
<!--
 +
This page doesn't seem sufficiently Getz Lab-specific or Broad-specific.
 +
All of its information can/should be found elsewhere.
 +
It also seems redundant with the [[Educational Materials]] page.
 +
[[Understanding the Basics: Introductory Information On Cancer & the Human Genome]]
 +
-->
 +
[https://drive.google.com/drive/folders/0AIXHXFOYC26ZUk9PVA Getz Lab Bootcamps (Google Drive)]
 +
 
 +
[[Manuscript Writing Resources]]
  
[[New User Guide]]
+
[[CGA Glossary]]
  
[https://docs.google.com/document/d/1VO2kX_fgfUd0x3mBS9NjLUWGZu794WbTepBel3cBg08 WES Pipeline]
+
== Career & Grant Information ==
  
[[Administrative Information]]
+
[https://docs.google.com/spreadsheets/d/1tvF_MDC4JtExrBE9q3C68BFKIDdDz1sG/edit?usp=sharing&ouid=118226545663487160048&rtpof=true&sd=true List of grant opportunities]
  
 
[[Grant Writing Information]]
 
[[Grant Writing Information]]
 +
 +
[[Career Development]]
 +
 +
== Administrative ==
 +
 +
[[Travel]]
 +
 +
[[Expense reimbursement]]
 +
 +
[[Compliance/Legal]]
 +
 +
[[Internet Domains]]

Latest revision as of 07:37, 6 August 2024