Difference between revisions of "Getz Lab Wiki Main Page"

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<blockquote>Mission: ''to organize the <S>world's</s> lab's information and make it universally accessible and useful.''</blockquote>
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== General ==
 
== General ==
  
[[List of Lab Members]]
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[https://wiki.getzlab.org/wiki/Special:CreateAccount Create your wiki account]
  
[[Personnel Backgrounds & Expertise]]
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[[Who Knows What]]
  
[[On-going Projects]]
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[[How to contribute to this wiki]]
  
[[Getz Lab Organizational Project Chart]]
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== Onboarding ==
  
[[Getz Lab Publications]]
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[[New User Guide]]
  
[[Alumni]]
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== Computing ==
  
== Onboarding ==
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[[Computing in the Getz Lab: Getting Started]]
  
[[New User Guide]]
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[[Core bioinformatics tools]]
  
[https://www.youtube.com/channel/UCkXAqpR5Hk1ZmNd2-1K2l5Q/videos Terra Onboarding Video Guides]
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[[Other computational tools]]
  
[[Reference and Style Guide]]
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[[Bioinformatics pipelines]]
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* [[wolF]] (workflow manager)
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* [[Computing_in_the_Getz_Lab:_Getting_Started#Terra | Terra]] (workflow manager)
  
[[Running a Standard CGA Project]]
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[[Google Cloud Platform]]
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* [[Google Cloud Billing]]
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* [[Google Cloud troubleshooting]]
  
[[Installing Software]]
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[[GitHub]]
  
[https://docs.google.com/document/d/1j53wOkm---yHjEkc3kSoXAyVx2nrXQb9ZgvWmuYWFuE/edit?usp=sharing Brief Guide to Setting Up a Google VM]
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[[Reference Files]]
  
[[Managing GCP Disks]]
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[[Data and portals]]
  
[[cgaitools]]
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[[Common File Types in Bioinformatics]]
  
[[CGA Glossary]]
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[[Installing commercial software]]
  
== Computational Information ==
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== Project Management ==
  
[[Google Cloud Billing]]
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[[Project Management Resources]]
  
[[RNA-seq pipeline]]
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[[Project budgeting]]
  
[https://docs.google.com/document/d/1VO2kX_fgfUd0x3mBS9NjLUWGZu794WbTepBel3cBg08 WES Pipeline]
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[https://drive.google.com/drive/folders/1ghCluSTnkyjL3tszjgrNP1KYBfu8hri6 Talk: Running a Standard CGA Project]
  
[[Running PhylogicNDT]]
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[[Submitting data to dbGaP]]
  
[[ABSOLUTE]]
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[[Templates]]
  
[[Single Cell RNA]]
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[https://getzlab-effort-tracking.uc.r.appspot.com/ Reports]
  
[[Accessing protected data in the cloud (TCGA, ICGC, etc.)]]
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== Educational ==
  
[https://personal.broadinstitute.org/jma/gcp-vm-tracker/ Dashboard for managing Google Cloud VM]
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[[Educational Materials]]
  
[[GitHub Automation]]
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<!--
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This page doesn't seem sufficiently Getz Lab-specific or Broad-specific.
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All of its information can/should be found elsewhere.
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It also seems redundant with the [[Educational Materials]] page.
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[[Understanding the Basics: Introductory Information On Cancer & the Human Genome]]
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-->
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[https://drive.google.com/drive/folders/0AIXHXFOYC26ZUk9PVA Getz Lab Bootcamps (Google Drive)]
  
[https://rest-ui-dot-broad-cga-resistance-samples.appspot.com/ IBM Cancer Resistance Project Portal]
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[[Manuscript Writing Resources]]
  
[https://docs.google.com/document/d/1fhjpw-XhqDF7mM4mO7sAX9UJVv3If4L-wGrNRceREUU/edit#heading=h.5a9p1ef80fto Creating and Working with IBM Resistance Production Analysis Workspaces - Version 2]
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[[CGA Glossary]]
  
 
== Career & Grant Information ==
 
== Career & Grant Information ==
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[https://docs.google.com/spreadsheets/d/1tvF_MDC4JtExrBE9q3C68BFKIDdDz1sG/edit?usp=sharing&ouid=118226545663487160048&rtpof=true&sd=true List of grant opportunities]
  
 
[[Grant Writing Information]]
 
[[Grant Writing Information]]
  
[[Career Development Opportunities]]
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[[Career Development]]
  
== Administrative & Project Management Information ==
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== Administrative ==
 
 
[[Internet Domains]]
 
  
[[Administrative Information]]
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[[Travel]]
  
[[Project Management Resources]]
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[[Expense reimbursement]]
  
 
[[Compliance/Legal]]
 
[[Compliance/Legal]]
  
== Educational ==
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[[Internet Domains]]
 
 
[[Workshops]]
 
 
 
[[Getz Lab Bootcamps Link]]
 
 
 
[[Understanding the Basics: Introductory Information On Cancer & the Human Genome]]
 
 
 
[[Suggested Reading List]]
 
 
 
[[How to Guides]]
 
 
 
[[Educational Materials]]
 
 
 
[[Manuscript Writing Resources]]
 
 
 
[https://drive.google.com/file/d/1iJ7ZvwMoxjv53G-YB9FxvDaTmn46fe2A/view?usp=sharing Broad Institute Style Guide]
 
 
 
[[Getz_Lab_Archive | Getz Lab Archive]]
 

Latest revision as of 07:37, 6 August 2024